I finally got the textures loaded correctly for the most part! The solution to the UV problem was rather unusual lol. I had to flip each texture atlas horizontally and rotate it clockwise until it was upside down. Now everything looks fine!
As you saw in the second photo, I'm still missing a couple gates. But it's totally cool, it will be fixed. This skybox though will probably not be in the game. LOL I just wanted to see how it would look.
There are still things to be fixed, but it's coming along! Though, this town still needs a name. lol :D Now onto animations! :)